Awesome List Updates on May 26, 2024

9 awesome lists updated today.

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1. Awesome Bioie

Research Overviews / LLMs in Biomedical IE

• Large language models in healthcare: A comprehensive benchmark - a statistical and human evaluation of sixteen different LLMs applied to medical language tasks.

• Assessing the research landscape and clinical utility of large language models: a scoping review - a high-level review of LLM applications in medicine as of March 2024.

• Ethical and regulatory challenges of large language models in medicine - a review of ethical issues arising from applications of LLMs in biomedicine.

• On the Dangers of Stochastic Parrots: Can Language Models Be Too Big? 🦜 - a frequently referenced but still relevant work concerning the roles, applications, and risks of language models.

Tutorials / Pre-LLM Guides, Lectures, and Courses

• Getting Started in Text Mining - A brief introduction to bio-text mining from Cohen and Hunter. More than ten years old but still quite relevant. See also an earlier paper by the same authors.

• Biomedical Literature Mining - A (non-free) volume of Methods in Molecular Biology from 2014. Chapters covers introductory principles in text mining, applications in the biological sciences, and potential for use in clinical or medical safety scenarios.

Techniques and Models / Text Embeddings

• This paper from Hongfang Liu's group at Mayo Clinic demonstrates how text embeddings trained on biomedical or clinical text can, but don't always, perform better on biomedical natural language processing tasks. That being said, pre-trained embeddings may be appropriate for your needs, especially as training domain-specific embeddings can be computationally intensive.

• BioASQword2vec - paper - Qord embeddings derived from biomedical text (>10 million PubMed abstracts) using the popular word2vec tool.

• BioWordVec - paper - code (⭐152) - Word embeddings derived from biomedical text (>27 million PubMed titles and abstracts), including subword embedding model based on MeSH.

2. Awesome Angular

DOM / Google Developer Experts

• ngx-highlightjs (⭐292) - Instant code highlighting, auto-detect language, super easy to use!

Form Controls / Google Developer Experts

• ngx-bar-rating (⭐219) - Angular Bar Rating.

Scroll / Google Developer Experts

• ngx-scrollbar (⭐642) - Custom overlay-scrollbars with native scrolling mechanism.

3. Awesome Django

Third-Party Packages / Permissions

• django-role-permissions (⭐745) - Django app for role-based permissions management.

• django-guardian (⭐3.8k) - Per object permissions in Django.

• django-rules (⭐1.9k) - A tiny but powerful app providing object-level permissions, built from the ground up for Django.

4. Awesome Agi Cocosci

Domain Specific Language / Declarative DSL Applications

• The BioPAX community standard for pathway data sharing - Nature Biotechnology, 2010. [All Versions]. [Preprint]. Biological Pathway Exchange (BioPAX) is a standard language to represent biological pathways at the molecular and cellular level and to facilitate the exchange of pathway data. BioPAX can represent metabolic and signaling pathways, molecular and genetic interactions and gene regulation networks.

5. Awesome Docker

Security

• Anchor (⭐18) - A tool to ensure reproducible builds by pinning dependencies inside your Dockerfiles @SongStitch

6. Awesome Devsecops

Intentionally Vulnerable Applications / Ansible

• CI/CD Goat (⭐2.1k) - Cider Security - A deliberately vulnerable CI/CD environment. Learn CI/CD security through multiple challenges.

7. Awesome Nodejs

Packages / Mad science

• ipfs (⭐1.2k) - Distributed file system that seeks to connect all computing devices with the same system of files.

8. Free for Dev

Testing

• Repeato No-code mobile app test automation tool built on top of computer vision and AI. Works for native apps, flutter, react-native, web, ionic, and many more app frameworks. The free plan is limited to 10 tests for iOS and 10 for Android, but includes most of the features of the paid plans, including unlimited test runs.

Email

• Inboxes App — Create up to 3 temporary emails a day, then delete them when you're done from within a handy Chrome extension. Perfect for testing signup flows.

• Momentary Email — Free Temporary Email Addresses. Read incoming emails on the website or by RSS feed.

9. Awesome Zsh Plugins

Plugins / superconsole - Windows-only

• jrgit (⭐0) - Provides a suite of functions to streamline the Git user experience. It includes features for installing and configuring Git, handling large files with Git LFS, improving diff outputs, and managing credentials and keys securely.

• tab-title (p1r473) (⭐1) - Rename tmux (⭐38k) and screen panes and windows.

• tab-title (trystan2k) (⭐49) - Set the terminal tab title according to current directory or running process. Forked from termsupport.zsh (⭐180k).

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